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PLANT·EVOLUTION·&·DIVERSIFICATION
  • Home
  • People
  • Research
  • Publications
  • Management & Resources
  • Dissemination & Outreach
  • Journal clubs
  • Teaching
  • Opportunities

Publications

IN PREPARATION OR REVIEW

Berbel, M., García-Muñoz, A., Ferreira-Rodriguez, A., del Valle, J. C., Narbona, E., Muñoz-Pajares, A. J., Abdelaziz, M.
Does natural selection drive hybridization phenomenon within Erysimum spp wild populations?
​

Ferrón, C., García-Muñoz, A., Abdelaziz, M., Muñoz-Pajares, A. J.
Developing an index to assess the individual contribution on phenotypic integration (ICoPI): modelling and application to empirical data.

Morillas, L., Leiva, M.J., Gandullo, J., Pérez-Ramos, I.M., Cambrollé, J., Matías, L. 
Consistent geographical gradient of water use efficiency evidences local adaptations to drought across the complete latitudinal distribution of Quercus suber.
​​​
Viveiros Moniz, M., Berbel, M., García-Muñoz, A., Fernandez-Palacios, J. M., Sequeira, M., Abdelaziz M., Muñoz-Pajares A. J.
Dispersion, speciation and diversification patterns of the Erysimum genus across the Macaronesia.

Pérez-Romero*, J.A., García Muñoz*, A., Olivieri, E., Muñoz-Pajares, A.J., Abdelaziz, M., Godoy, O.
Effects of ploidy and heterozigosity on competitive outcomes.

García-Muñoz, A., Ferrón, C., Bakkali, M., Muñoz-Pajares, A. J., Abdelaziz, M.
Natural selection makes heritable phenotypic plasticity adaptive but constrained by trait function.


2025

10. García-Muñoz, A., Ferrón, C., Vaca-Benito, C., Olmedo-Castellanos, C., Martínez-Gómez, M.N., López-Pérez, T., Bakkali, M., Castro, S.,              Castro, M., Loureiro, J., Muñoz-Pajares, A.J., Abdelaziz, M.
      Can Ploidy Changes Propel the Evolution of Allogamy in a Selfing Species Complex?
      
BMC Plant Biology, In press.

 9. Wu, X., Bellagio, T., Peng, Y., Czech, L., Lin, M., Lang, P., Epstein, R., Abdelaziz, M., Alexander, J., Caton-Darby, M., Alonso-Blanco, C.,                         Andersen, H.L., Berbel, M., Bergelson, J., Burghardt, L., Delker, C., Dimitrakopoulos, P.G., Donohue, K., Durka, W., Escribano-Avila, G., Franks,       S.J., Fritschi, F.B., Galanidis, A., Garcia-Fernandez, A., Garcia-Munoz, A., Hamann, E., Herber, M., Hutt, A., Iriondo, J.M., Juenger, T.E., Keller, S.,       Koehl, K., Korte, A., Korte, P., Kuschera, A., Lara-Romero, C., Leventhal, L., Maag, D., Marcer, A., March-Salas, M., de Meaux, J., Mendez-Vigo,           B., Morente-Lopez, J., Morton, T. C., Munzbergova, Z., Muola, A., Partel, M., Pico, F.X., Quarles-Chidyagwai, B., Quint, M., Reichelt, N., Rudak,
     A., Schmitt, J., Seifan, M., Snoek, B.L., Stam, R., Stinchcombe, J.R., Stift, M., Taylor, M.A., Tiffin, P., Till-Bottraud, I., Traveset, A., Valay, J.G., van           Zanten, M., Vandvik, V., Violle, C., Wodkiewicz, M., Weigel, D., Bossdorf, O., Colautti, R., Vasseur, F., Scheepens, J.F., Exposito-Alonso, M. 2025
     Rapid adaptation and extinction across climates in synchronized outdoor evolution experiments of Arabidopsis thaliana.
     bioRxiv, 2025.05.28.654549
​     PDF


 8. Caracuel-Peramos, R., Rodríguez-Baena, F.J., Redondo-García, S., Villatoro-García, J.A., García-Muñoz, A., Peris-Torres, C., Plaza-Calonge,               M.C., Rubio-Gayarre, A., López-Millán, B., Ricciardelli, C., Russell, D.L., Carmona-Sáez, P., Rodríguez-Manzaneque, J.C. 2025.
     Loss of the extracellular protease ADAMTS1 reveals an antitumorigenic program involving the action of NIDOGEN-1 on macrophage                       polarization.
     OncoInmunology, 14: 2508057.

 7. Ramos-Onsins, S. E. 2025.
      A novel genotype likelihood-based method to reduce mapping bias in low-coverage and ancient DNA studies. 
      
Peer Community in Genomics, 1: 100410.

 6. Castellano, D., Vourlaki, I. T., Gutenkunst, R. N., Ramos-Onsins, S. E. 2025.
     Detection of domestication signals through the analysis of the full distribution of fitness effects.
     Peer community journal, 5: e35.

 5. Colangelo, M., Gazol, A., Camarero, J.J., Borghetti, M., Sánchez-Salguero, R., Matías, L., Castellaneta, M., Nola, P., Ripullone, F. 2025.
     Earlywood vessel characteristics are early indicators of drought-induced decline in ring-porous oak species within the Mediterranean Basin.         Science of The Total Environment, 980: 179565.

 4. Olmedo-Castellanos, C., García-Muñoz, A., Ferrón, C., Bakkali, M., Muñoz-Pajares, A.J., Abdelaziz, M. 2025.
      Ploidy variation modulates outbreeding response and promotes mating system evolution in a selfing lineage.
​      bioRxiv, 2025.04.15.648901

​ 3. Viveiros-Moniz, M., García-Muñoz, A., Matías, L., Abdelaziz, M., Muñoz-Pajares, A.J. 2025. 
     
Monitoring biodiversity in the global change era: The importance of herbaria and genetic diversity. 
     
Perspectives in Plant Ecology, Evolution and Systematics, 67: 125862.

 2. Campilho, A., Botticelli, D., Vila-Viçosa, C., Muñoz-Pajares, A. J., Curto, M. 2025.
     Combining leaf morphometrics with molecular characterization enhances the detection of natural hybrids between Quercus suber and                   Quercus rotundifolia.
     International Journal of Plant Sciences, In press.

 1. Gamboa, S., Cuesta, E., Domínguez-García, V., García-Muñoz, A., Gómez Cano, A.R., López-Guerrero, P., Menéndez, I., Oliver, A.,
     Velado-Alonso, E., Carro-Rodríguez, P.M., Sanz-Pérez, D. 2025. 
     Blood, Sweat, and Research: Menstruation’s Impact on Fieldwork in Natural Science
     Ecosistemas, 34: 2913-2913.
    

2024

17. Martins-Noguerol, R., Gallego-Tévar, B, Pérez-Ramos, I.M., Matías, L.,  Davy, A.J., Cambrollé, J. 2024.  
      
Evaluation of direct and transgenerational influences of salinity on germination and early seedling growth in an edible halophyte, Crithmum        maritimum. 
     Annals of Botany, mcae168.
     PDF
​

16. Medina, M., Reyes-Martín, M., Levy L., [...] Matías, L., [...], Leverkus, A.B. 2024. 
     
Germination of European acorns: Data from 93 batches of 12 Quercus species. 
      Annals of Forest Science, 81:50.
      PDF


15. Gaytan, A., Matías, L., Godoy, Ó., Pérez-Ramos, I.M., Homet, P., Moreira, X., Gómez-Aparicio, L. 2024.
      Climate change and exotic pathogens shift carbon allocation in Mediterranean mixed forests. 
      Journal of Ecology, 112: 2843–2860.
     PDF


14. Mora, P., Rico-Porras, J. M., Palomeque, T., Montiel, E. E., Pita, S., Cabral-de-Mello, D. C., & Lorite, P. 2024.
      Satellitome Analysis of Adalia bipunctata (Coleoptera): Revealing Centromeric Turnover and Potential Chromosome Rearrangements in a              Comparative Interspecific Study. 
      International Journal of Molecular Sciences, 25: 9214.

13. 
Bista, B., González-Rodelas, L., Álvarez-González, L., Wu, Z. Q., Montiel, E. E., Lee, L. S., ... & Valenzuela, N. 2024.
      De novo genome assemblies of two cryptodiran turtles with ZZ/ZW and XX/XY sex chromosomes provide insights into patterns of genome            reshuffling and uncover novel 3D genome folding in amniotes. 
      Genome research, 34: 1553-1569.


12. Vourlaki, I.-T., Ramos-Onsins, S. E., Pérez-Enciso, M., Castanera, R. 2024

      Evaluation of deep learning for predicting rice traits using structural and single-nucleotide genomic variants.
      Plant Methods, 20:121.
      PDF
11. Jowers, M. J., Pajares, J. M., Weber, J., Arkle, J., Arenas‐Castro, S., Ho, S. Y., Rivas, G. A., Murphy, J.                      C., Borzée, A., Pyron, R. A., Perez-Losada, M., Freitas, J. D., Downie, J. R., Moreno-Rueda, G., Forcina,                  G., Sánchez‐Ramírez, S. 2024.
      Testing molecular date estimates using an ecological and vicariant case study in treefrogs: The                        Geological‐Ecological Molecular Calibration. 
      Journal of Biogeography, 51:2136–2151.
     PDF
Foto
 10. Homet, P., Matías, L., Godoy, O., Gómez-Aparicio, L. 2023. 
       Evidence for additive and antagonistic effects of climate change and exotic pathogens on regeneration of Mediterranean forests. 
       Journal of Ecology, 112: 174-188.
      PDF
​ 9. Simón‐Porcar, V., Muñoz‐Pajares, A.J., Arroyo, J., Johnson, S.D. 2024
     FlowerMate: Multidimensional reciprocity and inaccuracy indices for style‐polymorphic plant populations.
     Applications in Plant Sciences, e11618.
     PDF

 8. Viveiros-Moniz, M., Garcia-Munoz, A., Matias, L., Abdelaziz, M., Muñoz-Pajares, A.J. 2024
     Monitoring biodiversity in the global change era: the importance of herbaria and genetic diversity.

     bioRxiv, 2024.05.01.591834
     PDF

​
 7. Gutiérrez-Valencia, J., Zervakis, P-I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., Bunikis, I., Soler, L., Hughes, P.W., Désamoré, A., Laenen,       B., Abdelaziz, M., Pettersson, O. V., Arroyo, J., Slotte, T. 2024.
     Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum.
     Molecular Biology and Evolution, 41: msae087.
     PDF
​​
 6. Vaca-Benito, C., Ferrón, C., Velázquez de Castro, A. J., Muñoz-Pajares, A. J., Abdelaziz, M., García-Muñoz, A. 2024.
     Plant-animal below-ground interaction modifies plant phenotype and its above-ground interactions: a review and new case study.
     bioRxiv, 2024.04.29.591669
     PDF


​ 5. Morillas, L., Leiva, M. J., Gandullo, J., Pérez-Ramos, I. M., Cambrollé, J., Matías, L. 2024.
     Consistent geographical gradient of water use efficiency evidences local adaptations to drought across the complete latitudinal distribution         of Quercus suber. 
     Plant Stress, 100432.
​     PDF


 4. Vourlaki, I. T., Ramos-Onsins, S. E., Perez-Enciso, M., Castanera, R. 2024.
     Evaluation of Deep Learning for predicting rice traits using structural and single-nucleotide genomic variants. 
     bioRxiv, 2024-01.
     
PDF
 
 3.
 
Vourlaki, I. T., Castellano, D., Gutenkunst, R. N., Ramos-Onsins, S. E. 2024.
​     
Detection of domestication signals through the analysis of the full distribution of fitness effects using simulations.
     bioRxiv, 2022.08.24.505198
     PDF


 2. González-Díaz, P., Cavers, S., Matías, L., Ennos, R.A., Cottrell, J.E., Jump, A.S. 2024. 
     Neighbouring Scots pine populations from contrasting climates show substantial population variability but consistent response to warming. 
     Environmental and Experimental Botany, 218: 105603.
     PDF

 1. Camarero, J.J., Sánchez-Miranda, A., Colangelo, M., Valeriano, C., Matías, L. 2023. 
     Climatic drivers of cork growth depend on site aridity. 
     Science of the Total Environment, 912: 169574​.
     PDF

2023 

[Total cites of the network this year: 2078]
19. Gutiérrez-Valencia, J., Zervakis, P-I., Postel, Z., Fracassetti, M., Losvik. A., Mehrabi, S., Bunikis, I., Soler, L., Hughes, P. W., Désamoré, A.,
      Laenen, B., Abdelaziz, M., Pettersson, O. V., Arroyo, J., Slotte, T. 2023.
      Genomic analyses elucidate the causes and consequences of breakdown of 2 distyly in Linum trigynum.
      bioRxiv, 2023-11.16.567348
      PDF
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18. García-Muñoz, A., Ferrón, C., Vaca-Benito, C., Martínez-Gómez, M. N., Castro, S., Castro, M., Loureiro, J., Muñoz-Pajares, A.                                  J., Abdelaziz, M. 2023.
       Can changes in ploidy drive the evolution to allogamy in a selfing species complex?
       bioRxiv, 2023-11.27.568831
       PDF


17. Pérez-Romero*, J. A., García-Muñoz*, A., Olivieri, E., Muñoz-Pajares, A. J., Abdelaziz, M., & Godoy, O. 2023.
       Effects of ploidy and genetic diversity on competitive outcomes. 
       bioRxiv, 2023-02.23.529645 DOI
       PDF

16. Guerra-Guimarães, L., Pinheiro, C., Oliveira, A. S. F., Mira-Jover, A., Valverde, J., Guedes, F. A. D. F., Azevedo, H., Várzea, V., 
Muñoz Pajares, A.         J. 2023.
       The chloroplast protein HCF164 is predicted to be associated with Coffea SH9 resistance factor against Hemileia vastatrix. 
       Scientific Reports, 13: 16019.
       PDF


15. García‐Muñoz, A., Ferrón, C., Vaca‐Benito, C., Loureiro, J., Castro, S., Muñoz‐Pajares, A. J., Abdelaziz, M. 2023.
       Ploidy effects on the relationship between floral phenotype, reproductive investment, and fitness in an autogamous species complex. 
       American Journal of Botany, e16197.
       PDF

14. Ramos-Onsins, S. E., Marmorini, G., Achaz, G., & Ferretti, L. 2023.
       A general framework for neutrality tests based on the site frequency spectrum. 
       Genes, 14: 1714.
       PDF


13. Martins-Noguerol R., Moreno-Pérez, A.J., Pedroche, J., Gallego-Tévar, B., Cambrollé, J., Matías, L., Fernández-Rebollo, P., Martínez-Force, F.,           Pérez-Ramos, I.M. 2023.
       Warming and rainfall reduction alter pasture productivity and composition of fatty acids and amino acids in Mediterranean silvopastoral               ecosystems. 
       Agriculture, Ecosystems and Environment, 358: 108703. 
       PDF

12. Tavares, S., Azinheira, H., Valverde, J., Muñoz-Pajares, A. J., Talhinhas, P., & Silva, M. D. C. 2023.
       Identification of HIR, EDS1 and PAD4 genes reveals differences between Coffea species that may impact disease resistance. 
       Agronomy, 13: 992.
       PDF

11. Ramayo-Caldas, Y., Crespo-Piazuelo, D., Morata, J., González-Rodríguez, O., Sebastià, C., Castello, A.,
 Dalmau, A., Ramos-Onsins, S., Alexiou,         K. G.,  Folch, J. M., Quintanilla, R., Ballester, M. 2023.
       Copy number variation on ABCC2-DNMBP loci affects the diversity and composition of the fecal microbiota in pigs. 
       Microbiology Spectrum, e05271-22.
       PDF


10. Homet, P., Matías, L., Godoy, O., Gómez-Aparicio, L. 2023. 
       Evidence for additive and antagonistic effects of climate change and exotic pathogens on regeneration of Mediterranean forests. 
       Journal of Ecology (In press)
      PDF

 9. Morillas, L., Leiva , M.J., Pérez-Ramos, I.M., Cambrollé, J., Matías, L. 2023. 
     Latitudinal variation in the functional response of Quercus suber seedlings to extreme drought. 
     Science of the Total Environment, 887: 164122. 
     PDF
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 8. Muñoz-Pajares, A. J., Várzea, V., & do Céu Silva, M. 2023.
      The story of coffee: legend and truth. 
      Trends in Plant Science, 28: 501-504.
      PDF


 7. Hidalgo-Gálvez, M.D., Matías, L., Cambrollé, J., Gutiérrez, E., Pérez-Ramos, I.M. 2023.
      Impact of climate change on pasture quality in mediterranean dehesas subjected to different grazing histories. 
      Plant and Soil, 488: 465-483. 
      PDF

 6. Bazakos, C., Alexiou, K. G., Ramos‐Onsins, S., Koubouris, G., Tourvas, N., Xanthopoulou, A., , Mellidou, I., Moysiadis, T., Vourlaki, I.T.                        Metzidakis, I., Sergentani, C., Manolikaki, I., Michailidis, M., Pistikoudi, A., Polidoros, A., Kostelenos, G., Aravanopoulos, F., Molassiotis, A.,                Ganopoulos, I. 2023.
      Whole genome scanning of a Mediterranean basin hotspot collection provide new insights into olive tree biodiversity and biology. 
      The Plant Journal, 116: 303–319
      PDF

 5. Ramos-Onsins, S. E. 2023.
      How to interpret the inference of recombination landscapes on methods based on linkage disequilibrium? 
      Peer Community In Genomics, 1: 100161.
      PDF


 4. Belluardo, F., Muñoz-Pajares, A. J., Miralles, A., Silvestro, D., Cocca, W., Ratsoavina, F. M.,  Villa, A., Roberts, S. H., Mezzasalma, M., Zizka,                A., Antonelli, A., Crottini, A. 2023.
      Slow and steady wins the race: diversification rate is independent from body size and lifestyle in Malagasy skinks (Squamata: Scincidae:                Scincinae). 
      Molecular Phylogenetics and Evolution,178: 107635.
      PDF

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 3. Homet, P., Ourcival, J.-M., Gutiérrez, E., Domínguez-Begines, J., Matías, L., Godoy, O., Gómez-Aparicio, L. 2023. 
      Short- and long-term responses of nematode communities to predicted rainfall reduction in Mediterranean forests. 
      Soil Biology and Biochemistry, 179:  108974 .  
​      
PDF

 2. Martins-Noguerol, R., Matías, L., Pérez-Ramos, I.M., Moreira, X., Francisco, M., Pedroche, J., DeAndrés-Gil, C., Gutiérrez, E., Salas Liñán,                  J.J.,  Moreno-Pérez, A.J., Davy, A.J.,  Figueroa, E., Cambrollé, J. 2023. 
      Soil physicochemical properties associated with the yield and phytochemical composition of the edible halophyte Crithmum maritimum. 
      Science of the Total Environment, 869: 161806 
      PDF

 1. Duval, H., Coindre, E., Ramos-Onsins, S. E., Alexiou, K. G., Rubio-Cabetas, M. J., Martínez-García, P. J., Wirthensohn, M., Dhingra, A.,                         Samarina, A., Arús, P. 2023.
     Development and evaluation of an AxiomTM 60K SNP array for almond (Prunus dulcis). 
      Plants, 12: 242.
      PDF

2022

[Total cites of the network this year: 2102]
15. Campelo, F., Sánchez-Salguero, R., Rodríguez-González, P.M., Colangelo, M., Sánchez-Miranda, A., Rita, A., Ripullone, F., Camarero, J.J. 2022.
      Growth phenological variations in the narrow-leaved ash (Fraxinus angustifolia) over the Mediterranean region: a simulation study.                          Dendrochronologia, 76: 126013.
      PDF

14. Gutiérrez-Valencia, J., Fracassetti, M., Berdan, E. L., Bunikis, I., Soler, L., Dainat, J., Kutschera, V.E., Losvik,A., Desamore, A., Hughes, P.W.,                 Foroozani, A., Laenen, B., Pesquet, E., Abdelaziz, M., Pettersson, O.V., Nystedt, B., Brennan, A.C., Arroyo, J., Slotte, T. 2022.
       Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level. 
       Current Biology, 32: 4360-4371.
       PDF


13. Vourlaki, I. T., Castanera, R., Ramos-Onsins, S. E., Casacuberta, J. M., & Pérez-Enciso, M. 2022.
      Transposable element polymorphisms improve prediction of complex agronomic traits in rice. 
      Theoretical and Applied Genetics, 135: 3211-3222.
      PDF

12. Belluardo, F., Scherz, M.D., Santos, B., Andreone, F., Antonelli, A., Glaw, F., Muñoz-Pajares, A.J., Randrianirina, J.E., Raselimanana, A.P.,                   Vences, M., Crottini, A. 2022.
      Molecular taxonomic identification and species-level phylogeny of the narrow-mouthed frogs of the genus Rhombophryne (Anura:                        Microhylidae: Cophylinae) from Madagascar. 
      Systematics and Biodiversity, 20: 1-13.
      PDF


11. Berbel-Cascales, M., Cortés-Molina, A.M., Lorite, J., Matías, L., Muñoz-Pajares, A.J., Abdelaziz, M. 2022. 
       Hibridación potencial de las especies vegetales del Parque Nacional de Aigüestortes i Estany de Sant Maurici.
       La investigació al Parc Nacinal d'Aigüestortes y Estany de Sant Maurici. Generalitat de Catalunya, 
Parc Nacinal d'Aigüestortes y Estany de           Sant Maurici. Pages: 75-84.

10. Ramayo-Caldas, Y., Crespo-Piazuelo, D., Morata, J., Gonzalez-Rodriguez, O., Sebastia, C., Castello, A.,  Dalmau, A., Ramos-Onsins, S, Alexiou,        K. G., Folch, J. M., Quintanilla, R., Ballester, M. 2022.
      Copy number variation on ABCC2-DNMBP loci impacts the diversity and composition of the gut microbiota in pigs. 
      bioRxiv, 2022-10.
      PDF

 9. Simón‐Porcar, V. I., Muñoz‐Pajares, A. J., de Castro, A., Arroyo, J. 2022.
     Direct evidence supporting Darwin's hypothesis of cross‐pollination promoted by sex organ reciprocity. 
     New Phytologist, 235: 2099-2110.
     PDF


 8. Rodríguez-Calcerrada, J., Chano, V., Matías, L., Hidalgo-Gálvez, M.D., Cambrollé, J., Pérez-Ramos, I.M. 2022.
     Three-year warming and rainfall reduction alter leaf physiology but not relative abundance of an annual species in a                                                   Mediterranean savanna. 
      Journal of Plant Physiology, 275: 153761. 
     PDF

 7. Hidalgo-Gálvez, M.D., Barkaoui, K., Volaire, F., Matías, L., Cambrollé, J., Fernández-Rebollo, P., Carbonero, M.D., Pérez-Ramos, I.M. 2022.
      Can trees buffer the impact of increasing aridity on pastures of Mediterranean dehesas? 
      Science of the Total Environment, 835: 155535. 
      PDF

 6. Jurado-Doña, V., López-Jurado, J., González-Román, A., Sánchez-Salguero, R., Matías, L., Díaz-Del Olmo, F. 2022. 
     Influence of site conditions and land management on Quercus suber L. population dynamics in the southern Iberian Peninsula. 
     iForest, 15: 77-84. 
     PDF

 5. Matías, L., Pérez-Luque, A.J., Zamora, R. 2022.
     Forest Dynamics Under Land-Use and Climate Change Scenarios.
     The Landscape of the Sierra Nevada: A Unique Laboratory of Global Processes in Spain. Pages: 213-228. 
     ISBN: 978-3-030-94218-2 


 4. Zamora, R., Lorite, J., Matías, L., Leverkus, A. B., Jimenez, M., Medina-Sánchez, J. M., Pérez-Martínez, C., Reche, I. 2022. 
     Ecosystems of Sierra Nevada in the Anthropocene: A new cocktail of species and ecological interactions.
     The Landscape of the Sierra Nevada: A Unique Laboratory of Global Processes in Spain. Pages: 305-308. 
     ISBN: 978-3-030-94218-2 

 3. Martins-Noguerol, R., Pérez-Ramos, I.M., 
Matías, L., Moreira, X., Francisco, M., García-González, A., Troncoso-Ponce, A.M., Thomasset, B.,             Martínez-Force, E., Moreno-Pérez, A.J., Cambrollé, J. 2022. 
     Crithmum maritimum seeds, a potential source for high-quality oil and phenolic compounds in soils with no agronomical relevance. 
      Journal of Food Composition and Analysis, 108: 104413. 
     PDF

 2. Martins-Noguerol, R., Matías, L., Pérez-Ramos, I.M., Moreira, X., Muñoz-Vallés, S., Mancilla-Leytón, J.M., Francisco, M., García-González, A.,           DeAndrés-Gil, C.,  Martínez-Force, E.,  Millán-Linares, M.C., Pedroche, J., Figueroa, M.E., Moreno-Pérez, A.J., Cambrollé, J. 2022. 
     Differences in nutrient composition of sea fennel (Crithmum maritimum) grown in different habitats and optimally controlled growing                     conditions. 
      Journal of Food Composition and Analysis, 106: 104266. 
     PDF
​

 1. Gomez-Aparicio, L., Dominguez-Begines, J., Villa-Sanabria, E., García, L. V., Muñoz-Pajares, A. J. 2022.
      Tree decline and mortality following pathogen invasion alters the diversity, composition and network structure of the soil microbiome. 
      Soil Biology and Biochemistry, 166: 108560.
      PDF
2021
[Total cites of the network this year: 1894]
12. Picó, F. X., Abdelaziz, M., Castilla, A. R. 2021.
       Introduction to the Special Issue: The ecology and genetics of               population differentiation in plants.
       AoB Plants, 13: plab057.
       PDF
AoB PLANTS SPECIAL ISSUE
Foto
Foto
11. Wieters, B., Steige, K. A., He, F., Koch, E. M., Ramos-Onsins, S. E., Gu, H., Guo, Y-L., Sunyaev, S., de Meaux, J. 2021.
       Polygenic adaptation of rosette growth in Arabidopsis thaliana. 
       Plos Genetics, 17: e1008748.
       PDF

​
10. Freitas, S., Gazda, M. A., Rebelo, M. Â., Muñoz-Pajares, A. J., Vila-Viçosa, C., Muñoz-Mérida, A., Gonçalves, L. M., Azevedo-Silva, D., Afonso,            S., Castro, I., Castro, P. H., Sottomayor, M., Beja-Pereira, A., Tereso, J., Ferrand, N., Gonçalves, E., Martins, A., Carneiro, M., Azevedo, H. 2021.
      Pervasive hybridization with local wild relatives in Western European grapevine varieties. 
      Science Advances, 7: eabi8584.
      PDF

 9. Abdelaziz, M., Muñoz-Pajares, A. J., Berbel, M., García-Muñoz, A., Gómez, J. M., Perfectti, F. 2021.
     Asymmetric reproductive barriers and gene flow promote the rise of a stable hybrid zone in the Mediterranean high mountain. 
     Frontiers in Plant Science, 12: 687094.
     PDF


 8. Camarero, J.J., Colangelo, M., Rodríguez-González, P.M., Sánchez-Miranda, A., Sánchez-Salguero, R., Campelo, F., Rita, A., Ripullone, F. 2021.
      Wood anatomy and tree growth covary in riparian ash forests along climatic and ecological gradients.
     Dendrochronologia, 70: 125891.
     PDF

 7. Biella, P., Akter, A., Muñoz-Pajares, A. J., Federici, G., Galimberti, A., Jersáková, J., Massimo, L., Mangili, F., Tommasi, N., Mangili, L. 2021.
     Investigating pollination strategies in disturbed habitats: the case of the narrow-endemic toadflax Linaria tonzigii (Plantaginaceae) on                     mountain screes. 
     Plant Ecology, 222: 511-523.
     PDF


 6. Rodríguez-González, P., Colangelo, M., Sánchez-Miranda, A., Sánchez-Salguero, R., Campelo, F., Rita, A., Gomes Marques, I., Albuquerque,            A., Ripullone, F., Camarero, J.J. 2021.
      Climate, drought and hydrology drive narrow-leaved ash growth dynamics in southern European riparian forests.
      Forest Ecology and Management, 490: 119128.
      PDF

 5. Matías, L. 2021.
      Application and analysis of a classroom improvement cycle on the subject “Environmental Science and Technology”.
      In: 
 R. Porlán, E. Navarro-Medina y A. F. Villarejo-Ramos (Coords.), Ciclos de Mejora en el Aula. 2021. Experiencias de Innovación docente de        la Universidad de Sevilla, (pp. 964-982). Sevilla: Editorial Universidad de Sevilla .  
      PDF

 4. Pérez-Ramos, I.M., Álvarez-Méndez, A., Wald, K., Matías, L., Hidalgo Gálvez, M.D., Navarro-Fernández, C.M. 2021. 
     Direct and indirect effects of global change on mycorrhizal associations of savanna plant communities. 
     Oikos, 130: 1370–1384. 
     PDF

 3. Homet, P., Gómez-Aparicio, L., Matías, L., Godoy, O. 2021. 
      Soil fauna modulates the effect of experimental drought on litter decomposition in forests invaded by an exotic pathogen. 
      Journal of Ecology, 109: 2963-2980. 
     PDF 

 2. Moreira, X., Pérez-Ramos, I.M., Matías, L., Francisco, M., García-González, A., Martins-Noguerol, R., Vázquez-González, C., Abdala-Roberts, L.,        Cambrollé, J.  2021. 
      Effects of soil abiotic factors and plant chemical defences on seed predation on sea fennel (Crithmum maritimum). 
      Plant and Soil 465: 289–300. 
      PDF

 1. Matías, L., Hidalgo-Gálvez, M.D., Cambrollé, J., Domínguez, M.T., Pérez-Ramos, I.M. 2021.
     How will forecasted warming and drought affect soil respiration in savannah ecosystems? The role of tree canopy and grazing legacy. 

     Agricultural and Forest Meteorology 304-305 -108425. 
     PDF
2020
[Total cites of the network this year: 1478]
12. Muñoz-Pajares* A. J., Abdelaziz* M., Picó F. X. 2020.
       Temporal migration rates affect the genetic structure of populations in the biennial Erysimum mediohispanicum with reproductive                           asynchrony
       AoB Plants, 12: plaa037
       DOI  PDF

11. Gefaell J., Prieto T., Abdelaziz M., Álvarez I., Antón J., Arroyo J., Bella J. L., Botella M., Bugallo A., Claramonte V., Gijón J., Lizarte E., Maroto R.           M., Megías M., Milá B., Ramón C., Vila M., Rolán-Alvarez M. 2020. 

       Acceptance and knowledge of evolutionary theory among third-year university students in Spain
       PLOS One, 15: e0238345
       DOI  PDF


10. Godoy, O., Gómez-Aparicio, L., Matías, L., Pérez-Ramos. I.M., Allan, E. 2020.  
       An excess of niche differences maximizes ecosystem functioning. 
       Nature Communications,11: 4180. 
       DOI  PDF

 9. Sánchez-Salguero, R., Colangelo, M., Matías, L., Ripullone, F., Camarero, J.J. 2020.
     Shifts in growth responses to climate and surpassed vulnerability thresholds characterize drought-dieback in two Mediterranean deciduous         oaks. 
     Forests, 11: 714.  
     PDF

 8. Bose, A., Gessler, A., Bolte, A., Bottero, A., Buras, A., Cailleret, M., Camarero, J. J., Häni, M., Heres, A. M., Hevia, A., Levesque, M., Linares, J. C.,         Martínez-Vilalta, J., Matías, L., Menzel, A., Sánchez-Salguero, R., Sanders, T., Saurer, M., Venetier, M., Ziche, D., Rigling, A.  2020.
     Growth and resilience responses of Scots pine to extreme droughts across Europe depend on pre-drought growth conditions. 
     Global Change Biology, 26: 4521-4537. 
     PDF

 7. Rodríguez-Valera, Y., Rocha, D., Naves, M., Renand, G., Pérez-Pineda, E., Ramayo-Caldas, Y., Ramos-Onsins, S. E. 2020.
     The identification of runs of homozygosity gives a focus on the genetic diversity and adaptation of the “Charolais de Cuba” cattle. 
     Animals, 10: 2233.
     PDF

 6. Jadhav, A., Zhao, L., Liu, W., Ding, C., Nair, V., Ramos-Onsins, S. E., & Ferretti, L. 2020.
    Genomic diversity and evolution of quasispecies in Newcastle disease virus infections. 
    Viruses, 12: 1305.
    PDF


 5. Pérez-Ramos, I. M., Cambrollé, J., Hidalgo-Galvez, M. D., Matías, L., Montero-Ramírez, A., Santolaya, S.,  Godoy, Ó. 2020.
     Phenological responses to climate change in communities of plants species with contrasting functional strategies. 
     Environmental and Experimental Botany, 170: 103852. 
     PDF

 4. Derrien, T., Ramos-Onsins, S. E. 2020.
      Assessing a novel sequencing-based approach for population genomics in non-model species. 
      Peer Community in Genomics, 1: 100002.
      PDF


 3. Leno-Colorado, J., Guirao-Rico, S., Pérez-Enciso, M., Ramos-Onsins, S. E. 2020.
     Pervasive selection pressure in wild and domestic pigs. 
     bioRxiv, 2020-09.
     PDF

​
 2. Hidalgo-Galvez M. D., Santolaya S., Matías L., Serrano M., Cambrollé J., Pérez-Ramos I.M. 2020.
      Tree canopy effects on the functional structure of herbaceous communities typical of savanna-like ecosystems. 
      IOBC-WPRS Bulletin, 152: 188-190. 
      PDF

 1. Homet, P., Gómez-Aparicio, L., Matías, L., Godoy, O. 2020.
     Effects of climate change on litter decomposition in a mixed oak forest under decline. 
     IOBC-WPRS Bulletin, 152: 8-14. 
     PDF

2019

[Total cites of the network this year: 1033]
 8. Homet, P., González, M., Matías, L., Godoy, O., Pérez-Ramos, I.M., García, L.V., Gómez-Aparicio, L. 2019.
     Exploring interactive effects of climate change and exotic pathogens on Quercus suber performance: damage caused by Phytophthora                     cinnamomi varies across contrasting scenarios of soil moisture. 
     Agricultural and Forest Meteorology, 276-277: 107605 . 
     PDF
​

 7. Matías, L., Pérez-Ramos, I.M., Gómez-Aparicio, L. 2019.
      Are northern-edge populations of cork oak more sensitive to drought than those of the southern-edge? 
      Environmental and Experimental Botany, 163: 78-85. 
      PDF

 6. Jiménez, M.N., Navarro, F.B., Sánchez-Miranda, A., Ripoll, M.A. 2019.
     Using stem diameter viariations to detect and quantify growth and relationships with climatic variables on a gradient of thinned Aleppo               pines.
     Forest Ecology and Management, 442: 53-62.
     PDF

 5. Brodde, L., Adamson, K., Camarero, J.J., Castaño, C., Drenkhan, R., Lehtijärvi, A., Luchi, N., Migliorini, D., Sánchez-Miranda, A., Stenlid, J.,               Özdağ, S., Oliva, J. 2019.
     Diplodia tip blight on Its way to the North: drivers of disease emergence in Northern Europe.
     Frontiers in Plant Science, 9: 414144.
     PDF

 4. Pérez-Ramos, I.M., Matías, L., Gómez-Aparicio, L., Godoy, O. 2019.
     Functional traits and phenotypic plasticity modulate species coexistence across contrasting climatic conditions.  
     Nature Communications, 10: 2555.
     PDF

 3. Matías L., López-Rodríguez M. J., Abdelaziz M. 2019.
     Conservación de interacciones ecológicas (Book chapter)
     Biología de la conservación de plantas en Sierra Nevada. Principios y retos para su preservación. Pages: 285-305. 
     ISBN PDF

 2. Abdelaziz M., Bakkali M., Gómez J. M., Olivieri E., Perfectti F. 2019.
​     Anther rubbing, a new mechanism that actively promotes selfing in plants
​     The American Naturalist, 193: 140-147.
     DOI  PDF

 1. Matias L., Abdelaziz M., Godoy O., Gómez-Aparicio L. 2019. 
​     Combined effects of climate and exotic pathogens increase mortality and hinder natural regeneration of an important oak species at its               southern distribution
     Diversity and Distributions, 25:524-535.
     DOI  PDF
2018​​
[Total cites of the network this year: 704]
15. Simón-Porcar V., Abdelaziz M., Arroyo J. 2018.
​      The role of pollinators in floral evolution: a Mediterranean perspective (main text in Spanish)
​      Ecosistemas, 27: 70-80.
      DOI  PDF

14. Camarero, J. J., Sánchez-Salguero, R., Sangüesa-Barreda, G., Matías, L. 2018.
       Tree species from contrasting hydrological niches show divergent growth and water-use efficiency. 
       Dendrochronologia, 52: 87-95. 
       PDF

13. Camarero, J.J., Gazol, A., Sangüesa-Barreda, G., Cantero, A., Sánchez-Salguero, R., Sánchez-Miranda, A., Granda, E., Serra-Maluquer, X.,                 Ibáñez, R. 2018.
       Forest growth responses to drought at short- and long-term scales in Spain: squeezing the stress memory from tree rings.
       Frontiers in Ecology and Evolution, 6: 9. 
       PDF

12. Ferretti, L., Ribeca, P., Ramos-Onsins, S. E. 2018.
       The site frequency/dosage spectrum of autopolyploid populations. 
       Frontiers in genetics, 9: 480.
      PDF


11. Salazar-Tortosa, D., Castro, J., Villar-Salvador, P., Viñegla, B., Matías, L., Michelsen, A., de Casas, R-R., Querejeta, J.I. 2018.
       The “isohydric trap”: a detrimental feedback between water shortage and nutrient acquisition drives differential response of European                 pines under climatic dryness. 
       Global Change Biology, 24: 4069-4083. 
       PDF  

​​10. Jiménez-Chacón, A., Homet, P., Matías, L., Gómez-Aparicio, L., Godoy, O. 2018.
      Fine scale determinants of soil litter fauna on a Mediterranean mixed forest invaded by the exotic soil-borne pathogen Phytophthora                      cinnamomi. 
      Forests, 9: 218. 
      PDF

 9. Ferretti, L., Klassmann, A., Raineri, E., Ramos-Onsins, S. E., Wiehe, T., Achaz, G. 2018.
     The neutral frequency spectrum of linked sites. 
     Theoretical population biology,123: 70-79.
     PDF

 8. Rodriguez-Valera, Y., Renand, G., Naves, M., Fonseca-Jiménez, Y., Moreno-Probance, T. I., Ramos-Onsins, S., Rocha, D., Ramayo-Caldas, Y.             2018.
     Genetic diversity and selection signatures of the beef ‘Charolais de Cuba’ breed. 
     Scientific Reports, 8: 11005.
     PDF


 7. Morata, J., Tormo, M., Alexiou, K. G., Vives, C., Ramos-Onsins, S. E., Garcia-Mas, J., & Casacuberta, J. M. 2018.
     The evolutionary consequences of transposon-related pericentromer expansion in melon. 
     Genome biology and evolution,10: 1584-1595.
     PDF

 6. Ramos-Onsins, S. E. 2018.
     Differential effect of genes in diverse environments, their role in local adaptation and the interference between genes that are physically             linked. 
     Peer Community in Evolutionary Biology, 100050.
     PDF

 5. Guirao-Rico, S., Ramirez, O., Ojeda, A., Amills, M., & Ramos-Onsins, S. E. 2018.
     Porcine Y-chromosome variation is consistent with the occurrence of paternal gene flow from non-Asian to Asian populations. 
     Heredity, 120: 63-76.
     PDF


 4. Matías, L., Godoy, O., Gómez-Aparicio, L., Pérez-Ramos, I.M. 2018.
      An experimental extreme drought reduces the likelihood of species to coexist despite increasing intransitivity in competitive networks. 
      Journal of Ecology, 106: 826-837. 
     PDF

 3. Muñoz-Pajares A. J., Perfectti F., Loureiro J., Abdelaziz M., Biella P., Castro M., Castro S., Gómez J. M. 2018.
     Niche differ ences may explain the geographic distribution of cytotypes in Erysimum mediohispanicum
     Plant Biology, 20: 139-147.
     DOI  PDF​​

 2. Domínguez, M.T., Jiménez, C., Matías, L., Gutiérrez, E., Herrador, M.B., Hidalgo, M.D., Pérez-Ramos, I.M. 2018.
     Interactive effects of climate change and grazing intensity on soil functioning in dehesa ecosystems. 
     VIII CICS: Soil, a sustentable resource for economy. Pages: 432-464.
     ISBN 978-84-09-02936-5. 
     PDF

 1. de la Riva, E., Villar, R., Pérez-Ramos, I.M., Quero, J.L., Matías, L., Poorter, L., Marañón, T. 2018.
     Relationships between leaf mass per area and nutrient traits in 98 Mediterranean woody species are determined by phylogeny, habitat and         leaf life-span. 
     Trees, 32: 497–510 . 
     PDF

2017
[Total cites of the network this year: 622]
 10. Muñoz-Pajares A. J., García C., Abdelaziz M., Bosch J., Perfectti F., Gómez J. M. 2017. 
        Drivers of genetics differentiation in a generalist insect-pollinated herb across spatial scales.
​        Molecular Ecology, 26: 1576-1585.
        DOI  PDF

 9. Rozas, J., Ferrer-Mata, A., Sánchez-DelBarrio, J. C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S. E., Sánchez-Gracia, A. 2017.
     DnaSP 6: DNA sequence polymorphism analysis of large data sets. 
     Molecular biology and evolution, 34: 3299-3302.
     PDF


 8. Vaz, A. S., Kueffer, C., Kull, C. A., Richardson, D. M., Schindler, S., Muñoz-Pajares, A. J., Vicente, J.R., Martins, J., Hui, C., Kühn, I., Honrado, J. P.       2017.
     The progress of interdisciplinarity in invasion science. 
     Ambio, 46: 428-442.
     PDF


 7. Matías, L., Linares, J.C., Sánchez-Miranda, A., Jump, A.S. 2017.
     Contrasting growth forecasts across the geographical range of Scots pine due altitudinal and latitudinal differences in climatic sensitivity.
 
     Global Change Biology
, 23: 4106-4116. 
     PDF

 6. Jiménez M.N., Pinto J.R., Ripoll M.A., Sánchez-Miranda A., Navarro F.B. 2017.
     Impact of straw and rock-fragment mulches on soil moisture and early growth of holm oaks in a semi arid area.
     Catena, 152: 198-206.
     PDF

 5. Ferretti, L., Ledda, A., Wiehe, T., Achaz, G., Ramos-Onsins, S. E. 2017.
     Decomposing the site frequency spectrum: the impact of tree topology on neutrality tests. 
     Genetics, 207: 229-240.
     PDF

 4. Sánchez-Salguero, R., Hevia, A., Camarero, J.J., Treydte, K., Frank, D., Crivellaro, A., Domínguez-Delmás, M., Hellman, L., Kaczka, R.J., Kaye, M.,       Akhmetzyanov, L., Ashiq, M.W., Bhuyan, U., Bondarenko, O., Camisón, A., Camps, S., García, V.C., Costa, F., Gavrila, I.G., Gulbranson, E.,                   Huhtamaa, H., Janecka, K., Jeffers, D., Jochner, M., Koutecký, T., Lamrani-Alaoui, M., Lebreton-Anberrée, J., Martín Seijo, M., Matulewski, P.,             Metslaid, S., Miron, S., Morrisey, R., Opdebeeck, J., Ovchinnikov, S., Peters, R., Petritan, A.M., Popkova, M., Rehorkova, S., Rodríguez, M.O.,              Sánchez-Miranda, A., Van der Linden, M., Vannoppen, A., Volařík, D. 2017.
     An intensive tree-ring experience. Connecting education and research during the 25th European Dendroecological Fieldweek (Asturias,                 Spain).
     Dendrochronologia, 42: 80-93.
     PDF

 3. Navarro, J., Nevado, B., Hernández, P., Vera, G., Ramos-Onsins, S. E. 2017.
     Optimized next-generation sequencing genotype-haplotype calling for genome variability analysis. 
     Evolutionary Bioinformatics, 13: 1176934317723884.
     PDF


 2. Matías, L., Castro, J., Villar-Salvador, P., Quero, J.L., Jump, A.S. 2017.
     Differential impact of hotter drought on seedling performance of five ecologically distinct pine species. 

     Plant Ecology, 218: 201-212. 
     PDF
​

 1. Caballero, M.C., Pérez-Ramos, I.M., Matías, L., Serrano, M. 2017.
     Simulation of the potential infectivity of 
Phytophthora cinnamomi under climate change. 
     Phytopathologia Mediterranea, 56: 372-373. 
​     
PDF

2016

[Total cites of the network this year: 561]
 4. Matías, L., González-Díaz, P., Quero, J.L., Camarero, J.J., Lloret, F., Jump, A.S. 2016.
     Role of geographical provenance on the response of silver fir seedlings to experimental warming and drought. 
     Tree Physiology, 36: 1236-1246. 
     PDF

 3. Clop, A., Sharaf, A., Castelló, A., Ramos-Onsins, S., Cirera, S., Mercadé, A., Derdak, S., Beltran, S., Huisman, A., Fredholm, M., van As,                       P., Sánchez, A. 2016.
     Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes. 
     BMC genomics, 17: 1-17.
​     PDF


 2. Boratyński, Z., Arias, J. M., Garcia, C., Mappes, T., Mousseau, T. A., Møller, A. P., Muñoz-Pajares, A. J., Piwczynski, M., Tukalenko, E. 2016.
     Ionizing radiation from Chernobyl affects development of wild carrot plants. 
     Scientific Reports, 6: 39282.
     PDF

 1. Montemuiño, C., Espinosa, A., Moure, J. C., Vera, G., Hernandez, P., Ramos-Onsins, S. 2016.
      Approaching long genomic regions and large recombination rates with msParSm as an alternative to MaCS. 
      Evolutionary Bioinformatics, 12: EBO-S40268.
      PDF

2015
[Total cites of the network this year: 560]
​14. Magalhães, V., Abrantes, J., Munõz-Pajares, A. J., & Esteves, P. J. 2015.
       Genetic diversity comparison of the DQA gene in European rabbit (Oryctolagus cuniculus) populations. 
       Immunogenetics, 67: 579-590.
       PDF


13. Argyris, J. M., Ruiz-Herrera, A., Madriz-Masis, P., Sanseverino, W., Morata, J., Pujol, M., Ramos-Onsins, S., Garcia-Mas, J. 2015.
      Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly. 
      BMC Genomics,16: 1-14.
      PDF

12. Sánchez-Salguero R., Linares J.C., Camarero J.J., Madrigal-González J., Hevia A., Sánchez-Miranda, A., Ballesteros-Canovas J.A.,
      Alfaro-Sánchez R., García-Cervigón A.I., Bigler C., Rigling A. 2015.
      Disentangling the effects of stand structure and climate on tree growth: land-use legacies determining tree-level competition and warming          sensitivity.
      Forest Ecology and Management, 358: 12-25.
​      PDF

11. Sánchez-Salguero R., Camarero J.J., Hevia A., Madrigal-González J., Linares J.C., Ballesteros-Canovas J.A., Sánchez-Miranda, A.,
      Alfaro-Sánchez R., Sangüesa-Barreda G., Galván J.D., Gutiérrez E., Génova M., Rigling A. 2015.
      What drives growth of Scots pine in continental Mediterranean climates: Drought, low temperatures or both?
      Agricultural and Forest Meteorology, 206:151-162.
     PDF

10. Casacuberta, J. G. M., Ramos-Onsins, S. 2015.
      Melon genome study reveals recent impacts of breeding. 
      Molecular biology and evolution, 32: 2801-2802.
     PDF


 9. Sanseverino, W., Hénaff, E., Vives, C., Pinosio, S., Burgos-Paz, W., Morgante, M., Ramos-Onsins, S. E., Garcia-Mas, J., Casacuberta, J. M. 2015.
     Transposon insertions, structural variations, and SNPs contribute to the evolution of the melon genome. 
     Molecular biology and evolution, 32: 2760-2774.
     PDF


 8. Torices, R., Muño-Pajares, A. J. 2015.
     PHENIX: An R Package to Estimate a Size-Controlled Phenotypic Integration Index.
     Applications in Plant Sciences, 3: 1400104
    PDF

 7. Gómez JM, González-Mejias A, Lorite J, Abdelaziz M, Perfectti F. 2015. 
     Climate change and the potential for hybridization-mediated extinction of endemic high-mountain plants: the silent extinction. 
     Biodiversity and Conservation, 
24: 1843-1857.
     DOI  

 6. Bianco, E., Nevado, B., Ramos-Onsins, S. E., Pérez-Enciso, M. 2015.
     A deep catalog of autosomal single nucleotide variation in the pig. 
     PloS one, 10: e0118867.
     PDF

 5. Perez-Enciso, M., Burgos-Paz, W., Ramos-Onsins, S. E. 2015.
     On genetic differentiation between domestic pigs and Tibetan wild boars. 
     Nature Genetics, 47: 190-192.
     PDF


 4. Matías, L., Zamora, R., Castro, J. 2015.
     Effects of the variability on the precipitation regime over the regeneration of Mediterranean mountain forests.
     Los Bosques y la Biodiversidad frente al Cambio Climático: Impactos, Vulnerabilidad y Adaptación en España.
 Pages: 215- 224.
     ISBN: 978-84-491-0038-3. 

     PDF

 3. Ferretti, L., Ramos-Onsins, S. E. 2015.
      A generalized Watterson estimator for next-generation sequencing: from trios to autopolyploids. 
      Theoretical population biology, 100: 79-87.
​      PDF


 2. Matías, L., Jump, A.S. 2015.
      Asymmetric changes of growth and reproductive investment herald altitudinal and latitudinal range shifts of two woody species. 

      Global Change Biology, 21: 882-896. 
​      
PDF

 1. Gómez J. M., Perfectti F., Abdelaziz M., Lorite J., Muñoz-Pajares A. J., Valverde J. 2015. 
     Evolution of pollination niches in a generalist plant clade. 
     New Phytologist, 205: 440-453.
     DOI   PDF
​

Before 2015
70. Abdelaziz M., Muñoz-Pajares A. J., Lorite J., Herrador M. B., Perfectti F., Gómez J. M. 2014. 
      Phylogenetic relationships of Erysimum (Brassicaceae) from the Baetic Mountains (SE Iberian Peninsula)
      Anales del Jardín Botánico de Madrid, 71: e005
      DOI   PDF

69. Ramos-Onsins, S. E., Burgos-Paz, W., Manunza, A., Amills, M. 2014.
      Mining the pig genome to investigate the domestication process. 
      Heredity,113: 471-484.
      PDF


68. Jiménez Morales, M.N., Pinto, J.R., Ripoll Morales, M.A., Sánchez-Miranda, A., Navarro Reyes, F.B. 2014.
      Restoring silvopastures with oak saplings: effects of mulch and diameter class on survival, growth, and annual leaf-nutrient patterns. 
      Agroforestry Systems, 88: 935-946.
      PDF
​
67. Zamora, R., Matías, L. 2014. 
     Seed dispersers, seed predators, and browsers act synergistically as biotic filters in a mosaic landscape.  
     PLoS ONE, 9: e107385. 
     PDF

66. Abdelaziz M., Muñoz-Pajares A. J., Berbel M., Perfectti F., Gómez J. M. 2014. 
      Association between inbreeding depression and floral traits in a generalist-pollinated plant
      Journal of Evolutionary Biology, 27: 2495-2506.
      DOI   PDF

65. Aponte, C., Matías, L., González-Rodríguez, V., Castro, J., García, L.V., Villar, R., Marañón, T. 2014.
      Soil nutrients and soil microbial biomass in three contrasting Mediterranean forests. 
      Plant and Soil, 380: 57-72. 
      PDF

64. Pfeifer, B., Wittelsbürger, U., Ramos-Onsins, S. E., Lercher, M. J. 2014.
      PopGenome: an efficient Swiss army knife for population genomic analyses in R. 
      Molecular biology and evolution, 31: 1929-1936.
      PDF

63. Nevado, B., Ramos‐Onsins, S. E., Perez‐Enciso, M. 2014.
      Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics            approaches for population genomics. 
      Molecular ecology, 23: 1764-1779.
      PDF


62. Matías, L., González-Díaz, P., Jump, A.S. 2014.
      Larger investment in roots in southern range-edge populations of Scots pine is associated with increased growth and seedling resistance to        extreme drought in  response to simulated climate change. 
      Environmental & Experimental Botany, 105: 32-38. 
      PDF

61. Gómez J. M., Muñoz-Pajares A. J., Abdelaziz M., Lorite J., Perfectti F. 2014. 
      Evolution of pollination niches and floral divergence in the generalist plant Erysimum mediohispanicum
      Annals of Botany, 113: 237-249.
      DOI   PDF

60. Matías, L., Jump, A.S. 2014.
      Impacts of predicted climate change on recruitment at the geographical limits of Scots pine. 
      Journal of Experimental Botany, 65: 299-310. 
      PDF

59. Esteve-Codina, A., Paudel, Y., Ferretti, L., Raineri, E., Megens, H. J., Silió, L., Rodríguez M. C., Groenen, M. A. M., Ramos-Onsins, S. E.,
      Pérez-Enciso, M. 2013.
      Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs. 
      BMC genomics, 14: 1-14.
      PDF


58. Touchan, R., Meko, D.M., Ballesteros, J.A., Sánchez-Salguero, R., Camarero, J.J., Kerchouche, D., Muntan, E., Khabcheche, M., Blanco, J.A.,
      Rodriguez Morata, C., Garófano-Gómez, V., Martín, L.A., Alfaro Sánchez, R., Garah, K., Hevia, A., Madrigal, J., Sánchez-Miranda, A.,
      Shestakova, T.A., Tabakova, M. 2013.
      Dendrochronology course in Valsaín forest, Segovia, Spain.
      Tree Ring Research, 69:  93-100.

57. Segura, J., Ferretti, L., Ramos-Onsins, S., Capilla, L., Farré, M., Reis, F., Oliver-Bonet, M., Fernández-Bellón, H., Garcia, F., Garcia-Caldés, M.,
      Roninson, T. J., 
Ruiz-Herrera, A. 2013.
      Evolution of recombination in eutherian mammals: insights into mechanisms that affect recombination rates and crossover interference. 
      Proceedings of the Royal Society B: Biological Sciences, 280: 20131945.
      PDF

56. Navarro, F.B., Romero-Freire, A., Del Castillo, T., Foronda, A., Jiménez, M.N., Ripoll, M.A., Sánchez-Miranda, A., Huntsinger, L.,
       Fernández-Ondoño, E. 2013.
       Effects of thinning on litterfall were found after years in a Pinus halepensis afforestation area at tree and stand levels.
       Forest Ecology and Management, 289: 354- 362.
       PDF

55. Ferretti, L., Ramos‐Onsins, S. E., Pérez‐Enciso, M. 2013.
      Population genomics from pool sequencing. 
      Molecular ecology, 22: 5561-5576.
      PDF

54. Pfeifer, B., Wittelsbuerger, U., Ramos Onsins, S., Lercher, M. 2013.
      PopGenome: an efficient swiss army knife for population genomic analyses in R. 
      Human heredity, 76: 109-109.
      PDF


53. Castro, J., Puerta-Piñero, C., Leverkus, A., Moreno-Rueda, G., Sánchez-Miranda, A. 2012.
      Post–fire salvage logging alters a key plant-animal interaction for forest regeneration.
      Ecosphere, 3: 90.

52. Ferretti, L., Raineri, E., & Ramos-Onsins, S. 2012.
      Neutrality tests for sequences with missing data. 
      Genetics,191: 1397-1401.
      PDF


51. Matías, L., Jump, A.S. 2012.
      Interactions between growth, demography and biotic interactions in determining species range limits in a warming world: the case of Pinus
      sylvestris
. 

      Forest Ecology and Management, 282: 10-22. 
      PDF

50. Matías, L., Quero, J.L., Zamora, R., Castro, J. 2012.
      Evidence for plant traits driving specific drought resistance. A community field experiment. 
      Environmental & Experimental Botany, 81: 55-61. 
      PDF

49. Matías, L., Zamora, R., Castro, J. 2012.
      Rare rainy events are more critical than drought intensification for woody recruitment in Mediterranean mountains: a field experiment
      simulating climate change. 

      Oecologia, 169: 833-844. 
      PDF

48. Matías, L., Castro, J., Zamora, R. 2012. 
      Effect of simulated climate-change on soil respiration in a Mediterranean-type ecosystem: rainfall and habitat- type are more important than
      temperature or the soil carbon pool. 

      Ecosystems, 15: 299-310. 
      PDF

47. Matías, L. 2012.
      Cambios en los límites de distribución de especies arbóreas como consecuencia de las variaciones climáticas. 
      Ecosistemas, 21: 91- 96.  
      PDF

46. Gómez J. M., Abdelaziz M., Fernández-Carmona J. D., Muñoz-Pajares A. J., Perfectti F. 2012.
      Biología de la polinización de Erysimum endémicos de la alta montaña de Sierra Nevada: Introgresión y extinción silenciosa
      Proyectos de Investigación en Parques Nacionales. Organismo Autónomo Parques Nacionales.
      PDF

45. Muñoz-Pajares AJ, Herrador MB, Abdelaziz M, Picó FX, Sharbel TF, Gómez JM, Perfectti F. 2011. 
      Characterization of microsatellite loci in Erysimum mediohispanicum (Brassicaceae) and cross-amplification in related species
      American Journal of Botany, e287-e289.
     DOI   PDF

44. Amaral, A. J., Ferretti, L., Megens, H. J., Crooijmans, R. P., Nie, H., Ramos-Onsins, S. E., Perez-Enciso, M., Schook, L. B., Groenen, M. A. 2011.
      Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA. 
      PloS one, 6: e14782.
      PDF

43. Ojeda, A., Ramos-Onsins, S. E., Marletta, D., Huang, L. S., Folch, J. M., & Pérez-Enciso, M. 2011.
      Evolutionary study of a potential selection target region in the pig. 
      Heredity, 106: 330-338.
      PDF


42. Castro, J., Allen, C.D., Molina–Morales, M., Marañón, S., Sánchez–Miranda, A., Zamora, R. 2011.
      Salvage logging versus the use of burnt wood as a nurse object to promote post-fire tree seedling.
     Restoration Ecology, 19: 537-544.
     PDF


41. Matías, L., Gómez-Aparicio, L., Zamora, R., Castro, J. 2011.
      Effects of resource availability on plant recruitment at community level: an integrated analysis using structural equation modelling. 
      Perspectives in Plant Ecology, Evolution & Systematics, 13: 277-285. 
      PDF

40. Matías, L., Zamora, R., Castro, J. 2011.
      Repercussions of simulated climate change on the diversity of woody-recruit bank in a Mediterranean-type ecosystem. 
      Ecosystems, 14: 672-682. 
      PDF

39. Matías, L., Castro, J., Zamora, R. 2011.
      Soil nutrient availability under a global change scenario in a Mediterranean mountain ecosystem. 
     Global Change Biology, 17: 1646-1657. 
     PDF

38. Abdelaziz M., Lorite J., Muñoz-Pajares A. J., Herrador M. B., Perfectti F., Gomez J. M. 2011. 
      Using complementary techniques to distinguish cryptic species: A new Erysimum (Brassicaceae) species from North Africa
      American Journal of Botany, 98: 1049-1060.
     DOI   PDF

37. Ferretti, L., Perez-Enciso, M., & Ramos-Onsins, S. 2010.
      Optimal neutrality tests based on the frequency spectrum. 
      Genetics, 186: 353-365.
      PDF


36. Puerta Piñero, C., Sánchez-Miranda, A., Leverkus, A., Castro, J. 2010.
      Management of burnt wood after fire affects post-dispersal acorn predation.
      Forest Ecology and Management, 260: 345-352.
      PDF

35. Heidel, A. J., Ramos-Onsins, S. E., Wang, W. K., Chiang, T. Y., & Mitchell-Olds, T. 2010.
      Population history in Arabidopsis halleri using multilocus analysis. 
      Molecular Ecology, 19: 3364-3379.
      PDF

34. He, F., Chen, W. H., Collins, S., Acquisti, C., Goebel, U., Ramos-Onsins, S., Lercher, M. J. de Meaux, J. 2010.
       Assessing the influence of adjacent gene orientation on the evolution of gene upstream regions in Arabidopsis thaliana. 
      Genetics, 185: 695-701.
      PDF


33. Gómez J. M., Abdelaziz M., Lorite J., Muñoz-Pajares A. J., Perfectti F. 2010. 
      Changes in pollinator fauna cause spatial variation in pollen limitation
      Journal of Ecology, 98: 1243-1252.
     DOI   PDF

32. Matías, L., Zamora, R., Mendoza, I., Hódar, J.A. 2010.
       Seed dispersal pattern by large frugivorous mammals in a degraded mosaic landscape. 
       Restoration Ecology, 18: 619-627. 
      PDF

31. Zamora, R., Hódar, J.A., Matías, L., Mendoza, I. 2010.
      Positive adjacency effects mediated by seed disperser birds in pine plantations. 
      Ecological Applications, 20: 1053-1060. 
      PDF

30. Matías, L., Castro, J., Zamora, R. 2010.
      Dinámica de nutrientes bajo diferentes escenarios climáticos en un ecosistema de montaña mediterránea.
      IV CICS. Suelo: funciones y manejo. Pages: 980-991.  
     PDF

29. Matías, L., Mendoza, I., Zamora, R. 2009.
      Consistent pattern of habitat and species selection by post-dispersal seed predators in a Mediterranean mosaic landscape. 
      Plant Ecology, 203: 137-147. 
      PDF

28. Mendoza, I., Gómez-Aparicio, L., Zamora, R., Matías, L. 2009.
      Recruitment limitation of forest communities in a degraded Mediterranean landscape. 
      Journal of Vegetation Science, 20: 367-376. 
     PDF

27. Song, B. H., Windsor, A. J., Schmid, K. J., Ramos-Onsins, S., Schranz, M. E., Heidel, A. J., & Mitchell-Olds, T. 2009.
      Multilocus patterns of nucleotide diversity, population structure and linkage disequilibrium in Boechera stricta, a wild relative of Arabidopsis. 
      Genetics, 181: 1021-1033.
      PDF


26. Matías, L., Zamora, R., Castro, J. 2009.
      Efectos del cambio climático sobre la regeneración del bosque mediterráneo.
      Montes y Sociedad: saber qué hacer. Sociedad Española de Ciencias Forestales-Junta Castilla y León.  
      PDF

25. Matías, L., Castro, J., Zamora, R. 2009.
      Disponibilidad de nutrientes en suelo en bajo un escenario de cambio global.
      Montes y Sociedad: saber qué hacer. Sociedad Española de Ciencias Forestales-Junta Castilla y León. 
      PDF

24. Quero, J.L., Villar, R., Poorter, L., Marañón, T., Matías, L., Aponte, C., García, L.V., Casado, R., Herrero, A., Suarez, E., Navarro-Cerrillo, R.M.,
       Zamora, R. 2009.
       Espectro de variación foliar en bosquesmediterráneos del sur de la Península Ibérica.
       Montes y Sociedad: saber qué hacer. Sociedad Española de Ciencias Forestales-Junta Castilla y León.  
       PDF

23. Gómez J. M., Abdelaziz M., Muñoz-Pajares A. J., Perfectti F. 2009. 
       Heritability and genetic correlation of corolla shape and size in Erysimum mediohispanicum.
       Evolution, 63: 1820-1831.
       DOI   PDF

22. Gómez J. M., Abdelaziz M., Camacho J. P. M., Muñoz-Pajares A. J., Perfectti F. 2009 
      Local adaptation and maladaptation to pollinators in a generalist geographic mosaic
      Ecology Letters, 12: 672-682. 
      DOI   PDF

21. Gómez J. M., Bosch J., Perfectti F., Fernandez J., Abdelaziz M., Camacho J. P. M. 2008. 
       Spatial variation in selection on corolla shape in a generalist plant is promoted by the preference patterns of its local pollinators
       Proceeding of The Royal Society B, 275: 2241-2249.
       DOI   PDF

20. Gómez-Aparicio, L., Pérez-Ramos, I.M., Mendoza, I., Matías, L., Quero, J.L., Castro, J., Zamora, R., Marañón, T. 2008.
      Oak seedling survival and growth along resource gradients in Mediterranean forest: implications for regeneration in current and future
      environmental scenarios. 

      Oikos, 117: 1683-1699. 
      PDF

19. Gómez J. M., Bosch J., Perfectti F., Fernandez J., Abdelaziz M., Camacho J.P.M. 2008. 
      Association between floral traits and reward in Erysimum mediohispanicum (Brassicaceae)
      Annals of Botany, 101: 1413-1420.
      DOI   PDF

18. Matías, L., García, D., Zamora, R. 2008.
      Efectos escala-dependientes de la abundancia de semillas y la estructura del hábitat en la depredación postdispersiva de dos especies de
      matorral mediterráneo.

      Introducción al análisis espacial de datos en Ecología y Ciencias Ambientales: Métodos y aplicaciones. AEET-CAM-URJC.  
      PDF

17. Ramos‐Onsins, S. E., Puerma, E., Balañá‐Alcaide, D., Salguero, D., & Aguade, M. 2008.
      Multilocus analysis of variation using a large empirical data set: phenylpropanoid pathway genes in Arabidopsis thaliana. 
      Molecular Ecology, 17: 1211-1223.
      PDF


16. Castro, J., Reich, P.B., Sánchez-Miranda, A., Guerrero, J.D. 2008.
      Evidence that the negative relationship between seed mass and RGR is not a physiological effect but a trait linked to species identity: a
      within family analysis in Scots pine.

      Tree Physiology, 28: 1077-1082.
      PDF

15. Gómez J. M., Bosch J., Perfectti F., Fernandez J., Abdelaziz M. 2007. 
       Pollinator diversity affects plant reproduction and recruitment: the tradeoffs of generalization
       Oecologia, 153: 597-605.
       DOI   PDF

14. Ramos-Onsins, S. E., Mousset, S., Mitchell-Olds, T., Stephan, W. 2007.
       Population genetic inference using a fixed number of segregating sites: a reassessment. 
      Genetics Research, 89: 231-244.
      PDF

13. Ramos-Onsins, S. E., Mitchell-Olds, T. 2007.
       Mlcoalsim: multilocus coalescent simulations. 
       Evolutionary Bioinformatics, 3: 117693430700300020.
       PDF


12. Abdelaziz M., Teruel M., Chobanov D., Camacho J. P. M., Cabrero J. 2007. 
      Physical mapping of rDNA and satDNA in A and B chromosomes of the grasshopper  Eyprepocnemis plorans from a Greek population
      Cytogenetic and Genome Research, 119: 143-146.
      DOI   PDF

​11. Quesada, H., Ramos-Onsins, S. E., Rozas, J., Aguadé, M. 2006.
       Positive selection versus demography: evolutionary inferences based on an unusual haplotype structure in Drosophila simulans. 
       Molecular biology and evolution, 23: 1643-1647.
       PDF


10. Balañá‐Alcaide, D., Ramos‐Onsins, S. E., Boone, Q., Aguadé, M. 2006.
       Highly structured nucleotide variation within and among Arabidopsis lyrata populations at the FAH1 and DFR gene regions. 
       Molecular Ecology, 15: 2059-2068.
       PDF

 9. Solla, A., Sánchez-Miranda, A., Camarero, J.J. 2006.
     Radial-growth and wood anatomical changes in Abies alba infected by Melampsorella caryophyllacearum: a dendroecological assessment of
     fungal damage.

     Annals of Forest Science, 63: 293– 300.

 8. Schmid, K. J., Ramos-Onsins, S., Ringys-Beckstein, H., Weisshaar, B., Mitchell-Olds, T. 2005.
     A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence
     polymorphism.
 
     Genetics, 169: 1601-1615.
     PDF

 7. Quesada, H., Ramos-Onsins, S. E., Aguadé, M. 2005.
     Birth-and-death evolution of the Cecropin multigene family in Drosophila. 
     Journal of molecular evolution, 60: 1-11.
    PDF

 6. Ramos-Onsins, S. E., Stranger, B. E., Mitchell-Olds, T., Aguadé, M. 2004.
     Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata. 
     Genetics, 166: 373-388.
     PDF

 5. Ramos-Onsins, S. E., Rozas, J. 2002.
     Statistical properties of new neutrality tests against population growth. 
    Molecular biology and evolution, 19: 2092-2100.
    PDF


 4. Kuittinen, H., Aguadé, M., Charlesworth, D., Haan, A. D. E., Lauga, B., Mitchell‐Olds, T., Oikarinen, S., Ramos-Onsins, S., Stranger, B., Van
     Tienderen, P., Savolainen, O. 2002.

     Primers for 22 candidate genes for ecological adaptations in Brassicaceae. 
     Molecular Ecology Notes, 2: 258-262.
     PDF


 3. Zhao, Z., Jin, L., Fu, Y. X., Ramsay, M., Jenkins, T., Leskinen, E., Pamilo, P., Trexler, M., Patthy, L., Jorde L. B., Ramos-Onsins, S., Yu, N., 
     Li, W. H. 2000.
     Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22. 
     Proceedings of the National Academy of Sciences, 97: 11354-11358.
     PDF

 2. Ramos-Onsins, S., Aguadé, M. 1998.
     Molecular evolution of the Cecropin multigene family in Drosophila: functional genes vs. pseudogenes. 
     Genetics, 150: 157-171.
     PDF

 1. Ramos-Onsins, S., Segarra, C., Rozas, J., Aguadé, M. 1998.
     Molecular and chromosomal phylogeny in the obscura group of Drosophila inferred from sequences of the rp49 gene region. 
     Molecular Phylogenetics and Evolution, 9: 33-41.
     PDF


Thesis

​García-Muñoz, A. 2023.
Speciation associated to evolutionary transitions. Mechanisms driving the ploidy effects on the diversification in a selfing species complex. 
PhD Thesis. University of Granada, Granada. ISBN: 978-84-111-7981-2
URI


Muñoz-Pajares, A. J. 2013.
Erysimum mediohispanicum at the evolutionary crossroad: Phylogeography, phenotype, and pollinators.
PhD Thesis. University of Granada, Granada. ISBN: 978-84-902-8613-5. 
URI


Abdelaziz, M. 2013.
How species are evolutionarily maintained: Pollinator-mediated divergence and hybridization in Erysimum mediohispanicum and E. nevadense. 
PhD Thesis. University of Granada, Granada.  ISBN: 978-84-902-8569-5.
URI


Matías, L. 2010.
Efectos del cambio climático sobre la regeneración del bosque mediterráneo: una aproximación experimental.
PhD Thesis. University of Granada, Granada.  ISBN: 978-84-693-5970-9. 
PDF


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